Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| CESC | rs2131628 | chr1:7940104 | C/T | 4.97E-5 | 221 | 15 | 13.72 | 11.6 | KM Plot |
| CESC | rs2146378 | chr13:32179259 | C/T | 7.43E-11 | 224 | 4.8 | 15.28 | 13.8 | KM Plot |
| CESC | rs2250199 | chr20:1539350 | A/G | 0.000101 | 219 | 4.55 | 13 | 14.4 | KM Plot |
| CESC | rs2250289 | chr20:1540032 | A/G | 9.66E-5 | 220 | 4.55 | 13 | 14.1 | KM Plot |
| CESC | rs2256609 | chr22:21925017 | A/G | 5.62E-5 | 222 | 15.7 | 13.77 | 7.57 | KM Plot |
| CESC | rs2266959 | chr22:21922904 | G/T | 5.62E-5 | 222 | 15.7 | 13.77 | 7.57 | KM Plot |
| CESC | rs2266961 | chr22:21928597 | C/G | 5.62E-5 | 222 | 15.7 | 13.77 | 7.57 | KM Plot |
| CESC | rs2266963 | chr22:21947467 | C/G | 6.02E-5 | 223 | 15.3 | 12.83 | 7.57 | KM Plot |
| CESC | rs2298428 | chr22:21982892 | C/T | 3.1E-5 | 221 | 14.9 | 12.83 | 8.4 | KM Plot |
| CESC | rs2437731 | chr16:1869426 | A/G | 4.58E-5 | 224 | 6.02 | 15.17 | 13.8 | KM Plot |
| CESC | rs3018458 | chr11:112999738 | A/C | 4.4E-10 | 224 | 3.77 | 12.8 | 15.13 | KM Plot |
| CESC | rs313831 | chr7:65551226 | C/T | 1.06E-6 | 217 | 14.48 | 13.23 | 4.92 | KM Plot |
| CESC | rs313832 | chr7:65550891 | G/T | 1.06E-6 | 216 | 14.7 | 13.23 | 4.92 | KM Plot |
| CESC | rs313833 | chr7:65550875 | G/A | 4.65E-6 | 216 | 14.7 | 13.97 | 2.27 | KM Plot |
| CESC | rs34069418 | chr6:35002268 | C/T | 6.19E-6 | 219 | 14.48 | 13 | 2.05 | KM Plot |